| District | Lake name | Area (ha) | Altitude (m) | ||
| 1. | Ha | 1. | Lamsang Tsho | above 3 300 | |
| 2. | Doyang Tsho | 3 300 | |||
| 3. | Khurnu Tsho | 3 300 | |||
| 4. | Jika Tsho | 3 300 | |||
| 5. | La Tsho | 3 300 | |||
| 6. | Tshonapata Tsho | 3 300 | |||
| 7. | Lajab Tsho | 3 300 | |||
| 8. | Kip Tsho | 3 300 | |||
| 9. | Ramju Tsho | 3 300 | |||
| 10. | Gna Tsho | 3 300 | |||
| 11. | Negto Tsho | 3 300 | |||
| 12. | Reguna Tsho | 3 300 | |||
| 13. | Jiridung Tsho | 3 300 | |||
| 14. | Yak Tsho | 3 300 | |||
| 15. | Yum Tsho | 3 300 | |||
| 16. | Hala Tsho | 4 200 | |||
| 17. | Jhula Tsho | 4 200 | |||
| 2. | Thimbu | 18. | Simkota Tsho | above 3 300 | |
| (Pajoding) | 19. | Zehi Tsho | 3 300 | ||
| 20. | Jimilang Tsho | 3 300 | |||
| 21. | Dung Tsho | 3 300 | |||
| 22. | Yak Tsho | 3 300 | |||
| 23. | Gonana Tsho | above 4 000 | |||
| 24. | Zangta Tsho | ||||
| 25. | Tshoname Tsho | ||||
| 26. | Khera Tsho | ||||
| 27. | Tshosum Thu Tsho | ||||
| 28. | Nyar Tsho | ||||
| Thimbu | 29. | Pha Tsho | |||
| (Chimakothi) | 30. | Shawjayla Tsho | 1.3 | 3 000 | |
| Thimbua | 31. | Wannel Tsho | |||
| (Dagala) | 32. | Nagen Tsho | |||
| 33. | Dungkar Tsho | ||||
| 34. | Dung Tsho | ||||
| 35. | Lang Tsho | ||||
| 36. | Rinchensegiyom Tsho | ||||
| 37. | Hay Tsho | ||||
| 38. | Hon Tsho | ||||
| 39. | Dang Ta Tsho | ||||
| 3. | Punakha | 40. | Tshoka Tsho | ||
| (Lingshi) | 41. | Ding Ding Tsho | |||
| 42. | Tsho Chu Tsho | ||||
| 43. | Tsho Womo Tsho | ||||
| 44. | Tshoka Tsho | ||||
| 45. | Ding Ding Wama Tsho | ||||
| 46. | Tshophu Tsho | ||||
| 47. | Ho Ko Tsho | 60 | 1 829 | ||
| 4. | Wangdiphodrang (Sha Bela) | 48. | Chho Keep Tsho | ||
| 49. | Chho Chum Tsho | ||||
| 50. | Luchi Kha Tsho | 2.5 | 1 830 | ||
| 5. | Tongsa (Shamgang) | 51. | Buli Tsho | 2.0 | 372 |
| 6. | Samdrup Dzongkhar (Diapham) | 52. | Gulandi Tsho | 1.0 | 366 |
